Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHSKPPWLRAKAPTGEIFNETLNTVKLHGLHTVCEEAACPNIGECWNKRHATVMILGSVCTRACAFCNVATGIPNKLDPHEPENLAKAIKKLNLKYVVITSVDRDD-LPDGGASQFIKCIEEIRKITPETTVEILTPDFLNKKGAFEAIAVASPDVYNHNIEMVPRLYAR--IR--PRARYFHSLYLLKMVKQINPKLLTKSGLMV------GLGETKEEVLQVMDDLRSAEVDFITIGQYLQPTPKHAKIDRYVTPEEFEHYKYIAYSKGFLVVASSPLTRSSYHAEEDFNRLKACR |
| 1YDN Chain:A ((22-174)) | ---------------------------------------------------------------------------FVPTADKIALINRLSDCGYARIEATSFVSPKWVP--QLADSREVMAGIRRA-DGVRYSVLVPN----MKGYEAAAAAHADEIAVFISASE-GFSKANINCTIAESIERLSPVIGAAIN--DGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YDN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52495 for 1046 contacts (-50.2/contact) +
2D Compatibility (PS) -15175 + (NN) -5025 + (LL) 4976
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -71969.0 ( -68.80 by residue)
QMean score : 0.328
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