Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLEFIVRKNALLNIGKESTLPLALLTTITVGCYLSWWIVAFNIVCEY-------VVYKLASHYMAKYGNSEISTYGFMNKM---------NYIALGSKPLFTYLIAAFSVYLLTTNFIANGLTVGVGILGSLLALAILIEVLAPV------FSRGCKIYAEKHTRDLLDEGPKDRVQKETDLLGEYGT----------
4G6D Chain:B ((1-198))
MKLKILDKDNATLNVFHRNK-EHKTIDNVPTANLVDWYPLSNAYEYKLSRNGEYLELKRLRSTLPSSYGLDDNNQDIIRDNNHRCKIGYWYNPAVRKDNLKIIEKAKQYGLPIITEEYDANTVEQGFRDIGVIFQSLKTIVVTRYLEGKTEEELRIFNMKSEESQLNEALKESDFSVDLTYSDLGQIYNMLLLMKKISK
General information:
TITO was launched using:
RESULT:
Template:
4G6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89085 for 1048 contacts (-85.0/contact) +
2D Compatibility (PS) -17055 + (NN) 2874 + (LL) 176
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -105890.0 ( -101.04 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_4G6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G6D-query.scw
PDB file :
Tito_Scwrl_4G6D.pdb
: