Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIGSPVILAPMSGVT---------DYPFRSIVK--KLGASLLVSEMIASRAMIMQ-----------TRQSMQKA-----KVDELTAVQLAGC-----------------------EP------------DIMAEAAKLNEDMGAKIIDINFG---------CPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAVNVPVTVKIRTGWNN----ENRNAPRLAKIAEDLGAKMITVHGRTRAQ--LYN-GQADWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIARKHIGWYSSGFKNSSEFRVRVNNMTDSMEVKENIVSFFSQV |
3GR7 Chain:A ((16-326)) | -LKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARELGAKISAPVQYERGWRF-------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GR7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114677 for 1873 contacts (-61.2/contact) +
2D Compatibility (PS) -25086 + (NN) -7500 + (LL) 3628
1D Compatibility (HY) -2800 + (ID) 2050
Total energy: -148485.0 ( -79.28 by residue)
QMean score : 0.479
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