Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNSQLNYPITIELDDIKDTKLKLIKIVARLINKRYRTQKKAAIALKIDQPKVSQINKSKIEGFSLEYLLNLLVALDQDINMKIKHNSQHNIQ
2KPJ Chain:A ((5-73))
------------------KQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIA-IPRMGKVQALADYFNINKSDLIEDKKLNIDT
General information:
TITO was launched using:
RESULT:
Template:
2KPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21153 for 441 contacts (-48.0/contact) +
2D Compatibility (PS) -7507 + (NN) -5371 + (LL) 1348
1D Compatibility (HY) 0 + (ID) 450
Total energy: -33133.0 ( -75.13 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_2KPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPJ-query.scw
PDB file :
Tito_Scwrl_2KPJ.pdb
: