Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSWKYLFLFGPKGSGKTHLAHIWQSINNAIFINVNNFI-------------------SEIRYSNAFILEDVQDIQ-D------EATLLHCYNYMKEN-NKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIER-SFCSINRIIEKIDNGSMGSNVTIPFVSTLLKRDTT
3EIE Chain:A ((53-235))
--------------------------------------GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ---LDSAIRRRFE--RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSETRKL
General information:
TITO was launched using:
RESULT:
Template:
3EIE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75130 for 1034 contacts (-72.7/contact) +
2D Compatibility (PS) -16065 + (NN) -10013 + (LL) 2884
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: -103224.0 ( -99.83 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3EIE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EIE-query.scw
PDB file :
Tito_Scwrl_3EIE.pdb
: