Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINNRIGIYPGTFDPITFGHIDIIKRACKLVDRLIIGVAENINKHTTFDAKLRTSMAENEIKRLEIDVDVVSFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGESVSKFVSVGVQKELINLNRIGSE
4NAH Chain:E ((1-155))
--MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLP-NVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK----
General information:
TITO was launched using:
RESULT:
Template:
4NAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96715 for 1171 contacts (-82.6/contact) +
2D Compatibility (PS) -16200 + (NN) -3089 + (LL) 552
1D Compatibility (HY) -15600 + (ID) 3400
Total energy: -134452.0 ( -114.82 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_4NAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAH-query.scw
PDB file :
Tito_Scwrl_4NAH.pdb
: