Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSN-GLHKDVLQRSNYALSFSKMTFPHQMMRVV-LIEQVYRAFKIMRGEAYHK
1K3R Chain:A ((183-259))
---------------------------------------------------------------------ADVVVATSRNASPITSI-LDEVKTR-M-RGAREAAILFGGPYKGLPEIDA---DIWVN----TLPGQCTETVRTEEAVLATLSVFNM-----
General information:
TITO was launched using:
RESULT:
Template:
1K3R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32159 for 469 contacts (-68.6/contact) +
2D Compatibility (PS) -8200 + (NN) -4042 + (LL) 6804
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -41147.0 ( -87.73 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_1K3R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K3R-query.scw
PDB file :
Tito_Scwrl_1K3R.pdb
: