Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTGSLYLSLISLLQNHT-FQPEEKVCLFSYGSGAVGEIFSGSIVKGYDKALDKEKHLNMLESREQLSVEEYETFFNRFDNQEFDFERELTQDPYSKVYLYSIEDHIRTYKIEK
3V4X Chain:B ((281-387))
LYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMF----AETLDTDIDQTLEDELKYSISAINNTVRSYR---
General information:
TITO was launched using:
RESULT:
Template:
3V4X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19744 for 498 contacts (-39.6/contact) +
2D Compatibility (PS) -11173 + (NN) -2751 + (LL) 448
1D Compatibility (HY) -11600 + (ID) 2400
Total energy: -47220.0 ( -94.82 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3V4X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4X-query.scw
PDB file :
Tito_Scwrl_3V4X.pdb
: