Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
4D8V Chain:B ((31-251))
-------------QIADTVLLPGDPLRAKFIAETYLENVECYNEVRGMYGFTGTYKGKKISVQGTGMGVPSISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGSVDFAPCADFELLKNAYDAAKDKGVPVTVGSVFTADQFYNDDSQI-EKLAKYGVLGVEMETTALYTLAAKHGRKALSILTVSDHVLTGEETTAEERQTTFHDMIDVALHSV
General information:
TITO was launched using:
RESULT:
Template:
4D8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179069 for 1923 contacts (-93.1/contact) +
2D Compatibility (PS) -23821 + (NN) -4287 + (LL) 544
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -235433.0 ( -122.43 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4D8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D8V-query.scw
PDB file :
Tito_Scwrl_4D8V.pdb
: