Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRKRKWLIVICVLLVLITISQILKHFNYGTESKEAYNTYTVEKERQLDLQGKAYPREVKTYYKNNQVGTYLGVQVADGQTVKKGDMLINYKINSNKRQQLVDKIN--DTQHIITEVYLNITK-GLNNREIQKKLIEYKQTLYEAQQQLYQYDSQNRDSMYA--SFDGKIMIKNIDNDSDNQPILYLISKESHIKTSVTEFDLNKVKKGDKVNLSITSTGKTGAGIIKQISELPISYEENLSLHENDALHLPESNNDGELANSKSISASPIFKSNNNSELSKYGVIIDDLSLPIRAGYSLEIKVPLNAIKIPKSVLT---KGNNVFIVNKNS----IVEKRNIRIKRINGDIIVEKGL----KPGDKLIKQPKS---TMNDGDKVEISS-- |
| 3LD1 Chain:A ((5-363)) | LRD---------VILVSKDIPEQLCDALF------FYTSHNPKDYADAFAVRQKFDRNLQTG-KQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPFARKYRELLKTACQWSLTVETLDARALTLDEIFDPTEILWLQVAAKIQVSAMAMRRLVGEVTAKVMDALGSNMSALFQIFKQQIVRIFQAALAIFE---------NVSELPQRIAALKMAFAKCAKSITVVVMERTLVVREFA-----GTCLASINGAVAKFFEELPNGFMG--AKIFTTFAFFREAAVKIVDNIPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLTLLDQKAEIPVESEGWSAILGGHLCYVFKSGDRFYAAPLSGNFALHDVHCCERVVCL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 58551 for 2449 contacts (23.9/contact) +
2D Compatibility (PS) -34789 + (NN) 10075 + (LL) 1852
1D Compatibility (HY) -12400 + (ID) 2550
Total energy: 20739.0 ( 8.47 by residue)
QMean score : 0.171
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