Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKFKKVLVATAMVGVLATGVVGYGNQADAKVYSQNGLVLHDDANFLEHELSYIDV----LLDKNADQATKDNLRSYFADKGLHSIKD---------------IINKAKQDGFDVSKYEHVK
1REG Chain:X ((1-122))
MIEITLKKPEDFLKVKETLTR--MGIANNKDKVLYQSCHILQKKGLYYIVHFKEMLRMDGRQVEMTEEDEVRRDSIAWLLEDWGLIEIVPGQRTFMKDLTNNFRVISFKQKHEWKLVPKYTIGN
General information:
TITO was launched using:
RESULT:
Template:
1REG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15308 for 629 contacts (-24.3/contact) +
2D Compatibility (PS) -10544 + (NN) -323 + (LL) 20
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -32355.0 ( -51.44 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_1REG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1REG-query.scw
PDB file :
Tito_Scwrl_1REG.pdb
: