Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNEIQILNNGYPMPSVGLGVYKISDEDMTKVVNAAIDAGYRAFDTAYFYDNEASLGRALKDNGVDREDLFITTKLWNDYQGYEKTFEYFNKSIENLQTDYLDLFLIHWPCEADGLFLETYKAMEELYEQGKVKAIGVCNFNVHHLEKLMAQSSIKPMVNQIEVHPYFNQQELQEFCDRHDIKVTAWMPLMRN--RGLLDNPVIVKIAEKYHKTPAQVVLRWHLAHNRIIIPKSQTPKRIQENIDILDFNLELTEVAEIDALDRNARQGKNPDDVKIGDLK
4Q3M Chain:C ((6-272))
-------LNNNYEMPIIGLGTFRSKKNDAYNAVKAALEGGYRHIDTAMIYGNEEEVGRAIKDSNIPREEIFVTTKLWNTDQGYEKTLEAFNTSLKNLGLDYIDLYLIHWFKGYDNA-LSTYRAFETLYEEGKVKAIGVSNFNVHHLMYLMENAKIPPMVNQVETHVTLQNHFLHDYCKKNNIQLEAYAPLMSHQIKDLLSNETMAKIAKKHDKTIPQIAIRWLIEREIVVIPKSITPERIVQNFDVFDFTLDEEDMKSIRSVNTGKKIFTEFDNV------
General information:
TITO was launched using:
RESULT:
Template:
4Q3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148925 for 2255 contacts (-66.0/contact) +
2D Compatibility (PS) -29129 + (NN) -17028 + (LL) 1328
1D Compatibility (HY) -25200 + (ID) 6250
Total energy: -225204.0 ( -99.87 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_4Q3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q3M-query.scw
PDB file :
Tito_Scwrl_4Q3M.pdb
: