Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------MRNTNKFLLIPYLLWMVIFIIVPVVLLIYFSFLDING-----------HFSFTNYQQIFT-TKYLKMFAYSILYAALITIITLAISYPAAYYITRSKFQNILLMIMIIPTWINLLLKTYAFIGLLSHDGVINQFFHLFNLPSFNLLFTTGAFLVVASYIYIPFMILPIFNSMKAIPNNLLQASSDLGASPFYTFRKVIMPLTKEGVMTGIQVTFIPSLSLFMITRLIAGNKVINIGTAIEEQFLTIQNYGMGSTIAI----FLIVFMAFILIITKSSNGRG----------- |
| 4TQU Chain:N ((2-284)) | LATPFYSRSDRIFGIVNAVLLGIFALCALYPIIYIFSMSISSGAAVTQGRVFLLPVDIDFSAYGRVLHDKLFWTSYANTIFYTVFGVVTSLIFIVPGAYALSKPRI-----------RGRRVFGFIIAFTMWFN-AGMIPFFLNMRDLGLLD-----NRFGILIGFACNAFNIILMRNYFESISASFEEAARMDGANDLQILWKVYIPLAKPALATITLLCAISRWNGYFWAMVLLRAEEKIPLQVYLKKTIVDLNVNEEFAGALLTNSYSMETVVGAIIVMSIIPVIIVYPVVQKYFTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TQU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199088 for 1684 contacts (-118.2/contact) +
2D Compatibility (PS) -25526 + (NN) -4662 + (LL) 2116
1D Compatibility (HY) -17200 + (ID) 1800
Total energy: -246160.0 ( -146.18 by residue)
QMean score : 0.312
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