Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRIIKYLTILVISVVILTSCQSSSSQESTKSGEFRIVPTTVALTMTLDKLDL--PIVGKPTSYKTLPN---RY--KDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF---DSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQKKHPKVLILMGVPGSYLVATDKSYIGDLVKIAGGENVIKVK--DRQYISSNTENLLNINPDIILRLPHGMPEEVKKMFQKEFKQNDIWKHFKAVKNNHVYDLEEVPFGI-TANVD-ADKAMTQLYDLFYKDKK |
3GFV Chain:A ((29-299)) | ---------------------------KVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQV--LPKYLSKFKDDKYADVGSLKEPDFDKVAELDPDLIIISARQ-SESYKEFSKIA-PTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLNKNGLV--IMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKASTHGQSVSYEYISKTNPDYLFVIDRGTAIG-ETSSTKQVVENDYVKNVNAVKNGHVIYLDSATWYLSGGGLESMTQMIKEVKDGLEKEN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66322 for 2133 contacts (-31.1/contact) +
2D Compatibility (PS) -27798 + (NN) -17635 + (LL) 3948
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -119907.0 ( -56.22 by residue)
QMean score : 0.397
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