Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG-NKD---LIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSEIVKRFKSNTREEIIRYLQSIQQTLNN
1UJP Chain:A ((15-250))
-RAALIPYLTAGFPSREGFLQAVEEVL-PYADLLEIGLPYSD----GPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV------------EVKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGSALVRALEE-------------------
General information:
TITO was launched using:
RESULT:
Template:
1UJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -192295 for 1704 contacts (-112.8/contact) +
2D Compatibility (PS) -22672 + (NN) -11118 + (LL) 2200
1D Compatibility (HY) -17200 + (ID) 3350
Total energy: -244435.0 ( -143.45 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_1UJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJP-query.scw
PDB file :
Tito_Scwrl_1UJP.pdb
: