Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKR-LEIVSTIVKKHKIYKKEQIISYIEEYFGVR-YSATTIAKDLKELNIYRVPIDCETWIYKAINNQTEQEMREKFRHYCEHEVLSSIINGSYIIVKTSPGFAQGINYFIDQLN-IEEILGTVSGNDTTLILTASNDMAEYVYAKLFK
3V4G Chain:A ((6-149))
--KQDNLVRAFKALLKEERFGSQGEIVEALKQ-EGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLP----------TVSSSLRELVLDVDHNQALVVIHTGPGAAQLIARMLDSLGKSEGILGVVAGDDTIFITPTLTITTEQLFKSVC-
General information:
TITO was launched using:
RESULT:
Template:
3V4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76371 for 951 contacts (-80.3/contact) +
2D Compatibility (PS) -14656 + (NN) -5118 + (LL) 1180
1D Compatibility (HY) -8000 + (ID) 1400
Total energy: -104365.0 ( -109.74 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3V4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4G-query.scw
PDB file :
Tito_Scwrl_3V4G.pdb
: