Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
2F1D Chain:N ((12-192))
-IGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALRQA-TETDPR----------
General information:
TITO was launched using:
RESULT:
Template:
2F1D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132387 for 1501 contacts (-88.2/contact) +
2D Compatibility (PS) -19229 + (NN) -7777 + (LL) 872
1D Compatibility (HY) -12800 + (ID) 3800
Total energy: -175121.0 ( -116.67 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_2F1D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F1D-query.scw
PDB file :
Tito_Scwrl_2F1D.pdb
: