Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYE-NCYLGRCCI---------------NNHKIILPSDPDLRVQAEPEIALECDVKYDEKHLVTKLVP-------NFFMAFNDASVRN-LEATK-----LSQKKNFSPASKGIGQKLPIDRFVYGG--VCNNFSIASFLKYDNVWHIYGENSKLLKYEFFYQKLLDWIKNQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQNLLEEDALQTKEHANLSYVYQIVE |
1NKQ Chain:A ((12-238)) | -----IICIGRNYAAHIKELNN----------------Q--PFFFLKPTSSIVTPLSSSPANSTFNGLNEDGTNPGPIFIPR-G-VKVHHEIELALIVSKHLS---NVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFD-TFMPISAIVSREKFSSYKSNLQDIFRVK--CSVNGQLRQDGGTN---LMLHP----LHKILQHIS---------------TMISLEPGDIILTGTPA-----GVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67854 for 1379 contacts (-49.2/contact) +
2D Compatibility (PS) -19758 + (NN) 935 + (LL) 4992
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -89435.0 ( -64.85 by residue)
QMean score : 0.269
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