Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MMFHKALITFIVLWFFLNGLGAYDFKHCQAFFKKASLQKGGVALKELPKGVYLYYSKTY---PKHAKVIKSDPFIGLYLLQSAPSEYV-YTLRDLDKDALIRPMASIG-----ANQATEARLLVGQKGYDRYAQISQKTQKNGVISNICYQMLGLGVG---GNGF-IETKFIKRFLNQQEPY----YGDIGVRLEERHKRLVV----------AQFDPFFPKNPFLK-----NDEILAINDYKIHSLAEFEWVVSNLSYQSLAKVKIKRNHQIKEVTLKV-NKRYGGFLLKDTFLERYGIALDERFI------------ITKIGAHLPKGLDFLKLGDRILWVNHKSVSFNPKALREALSTPK--IELLVWRQGFEFYIKVR |
| 3PV2 Chain:A ((6-439)) | MPSMAPVLKNIMPAIVNVAVQGYLPNRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLSQSATFGIVSALKNFIQTDAAINPGNS-GGALVNAKGELIGINTAILVGIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT-DVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -158741 for 2581 contacts (-61.5/contact) +
2D Compatibility (PS) -34605 + (NN) 3661 + (LL) 196
1D Compatibility (HY) -5600 + (ID) 3300
Total energy: -198389.0 ( -76.87 by residue)
QMean score : 0.264
|
|
|