Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MAFKVVQICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDGSNRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALKYMGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQDPRYFDAISSLIKQTFTLPPPPENGNNKKKEEEYHRKLSLIL-AAKNSVFAHIRRGDYVGIGCQLGIDYQKKAVEYMAKRVPNMELFVFCEDL----KFTQNLDLGYPFMDMTTRDKDEEAYWDMLLMQSCKHGII----ANSTYSWWAAYLINNPGKIIIGPKHWLFGHENILCKEWVKIESHFEVKSQKYNA |
| 1N5D Chain:A ((1-288)) | SSNTRVALVTGA--NKGIGFAIVRDLCRQFAGDVVLTAR--DVARGQAAVKQLQAEGLSPRFHQLDIIDLQSIRALCDFLRKEYG-----------------GLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELVGLMNKFVEDTKNGVHRKEGWSDSTYGVTKIGVSVLSRIYARKLREQRAGDKILLNACCPGWVRTDMGGPKAPKSPEVGAETPVYLALLPSDAEGPHGQFVTDKKVVEWGVPPESYPWVNA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1N5D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -43973 for 2269 contacts (-19.4/contact) +
2D Compatibility (PS) -28158 + (NN) 4749 + (LL) 1756
1D Compatibility (HY) 3600 + (ID) 1700
Total energy: -63726.0 ( -28.09 by residue)
QMean score : 0.108
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