Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------MPKPKKNTLPCSLSVKM----SYFMRLLIKWRTRSLSHKMMTLVQILSIL-------ALASKASEDLEEQLKKIKDYIYKTLNAKIASDVYDRVLILVNEYCANEELFDKESVKISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKRKYD-EAYSLNSEDRILLEYQE--RLLEPSYASFSNKKFK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| 4NM6 Chain:A ((7-451)) | SCRCEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKEGKSSQGCPIAKWVVRRSSSEEKLLCLVRERA-GHTCEAAVIVILILVWEGIPLSLADKLYSELTETLRKY-------------GTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYN------------GCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLAEPVKTGSDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRISLVFYQHKSMNEPKHGLALWEAKMAEK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 3755 for 712 contacts (5.3/contact) +
2D Compatibility (PS) -15027 + (NN) 6041 + (LL) 2484
1D Compatibility (HY) -4400 + (ID) 1700
Total energy: -8847.0 ( -12.43 by residue)
QMean score : 0.055
|
|
|