Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQEKRLKAIQNKIASWIK-EIESGFIDALFSKIG--PSKMLRSKLMLALLDEKTDAIL----LDKALNLCAIVEMIQTASLLHDDVIDKATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKM-GESIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEASLKSMAILLNKDA---KMYADFGLHFGMAFQIIDDLLDITQDANTLGKPNFSDFKEGKTTLPYLLLYEKLNQHEQGLLISYFKQD--SHEIIEWTKEKFKQHGIIEETLKIAQVYSKKALEAIKG-EN---------NLILEKLAQDVIYRTF |
3APZ Chain:A ((14-347)) | -VADELSLLSNKLREMVLAEVP------------GVQGKQFRSTILLLMATALDV---TSELRVRQRGIAEITEMIHVASLLHDD----------------VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAMEEFPQ-----LREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3APZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126282 for 2118 contacts (-59.6/contact) +
2D Compatibility (PS) -29674 + (NN) -24859 + (LL) 2912
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -197403.0 ( -93.20 by residue)
QMean score : 0.540
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