Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETFGFLVEAEVEEFELKDAILRLAWRGWNEAKGDEYLEVYHAWLVEKLDNDRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
2NN5 Chain:A ((32-157))
---------------ENQTIYFGTER-AISASPQTIWRYLTETDKLKQWFPELEIG--------ELGVNGFWRFILPDFEETMPFTDYAE---EKYLGVTWDT---------GIIYFDLKEQAPHQTLLVFSESLPENFT-----TPRHKDIAGWSIVLNRLKQVVE
General information:
TITO was launched using:
RESULT:
Template:
2NN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35280 for 883 contacts (-40.0/contact) +
2D Compatibility (PS) -13414 + (NN) -973 + (LL) 3124
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -48693.0 ( -55.14 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_2NN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NN5-query.scw
PDB file :
Tito_Scwrl_2NN5.pdb
: