Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEMTAIQRVSKKGSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNSKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGLFIFVGYDVNNAVLKQEDNSMLCECDEYGSIVVDFSMKTNVQGLFAAGDIR--IFAPKQVVCAASDGATAALSVISYLEHH |
| 3F8R Chain:B ((17-316)) | --DVIIVGLGPAAYGAALYSARYMLKTLVIGE--TPGGQLTEAGIVDDYLGLIEIQAS-DMIKVFNKHIEKYEVPVLLDIVEKIENR-DEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKV-VKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAK----SNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3F8R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221666 for 2602 contacts (-85.2/contact) +
2D Compatibility (PS) -30896 + (NN) -3326 + (LL) 204
1D Compatibility (HY) -23600 + (ID) 5700
Total energy: -284984.0 ( -109.52 by residue)
QMean score : 0.527
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