Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAIK
3M4S Chain:B ((27-146))
---VVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL
General information:
TITO was launched using:
RESULT:
Template:
3M4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51866 for 951 contacts (-54.5/contact) +
2D Compatibility (PS) -12772 + (NN) -4011 + (LL) 376
1D Compatibility (HY) -12800 + (ID) 3300
Total energy: -84373.0 ( -88.72 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3M4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M4S-query.scw
PDB file :
Tito_Scwrl_3M4S.pdb
: