Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYASKLALKICLVGLCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYERAASFYKSAIKNGESLAYILLGIMYENGRGVPKDYKKAVEYFQKAVDNDIPRGYNNLGVMYKEGKGVPKDEKKAVEYFRIATEKGYTNAYINLGIMYMEGRGVPSNYAKATECFRKAMHKGN----VEAYILLGDIYYSGNDQLGIEPDKDKAVVYYKMAADV-SSSRAYEGLSESYRYGLG--VEKDKKKAEEYMQKACDFDIDKNCKKKNTSSR |
3RJV Chain:A ((4-210)) | -----------------------------------------------EPGSQYQQQAEAGDRRAQYYLADTWVS----SGDYQKAEYWAQKAAAQGDGDALALLAQLKIRN-PQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG---VHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRISK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RJV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51441 for 1718 contacts (-29.9/contact) +
2D Compatibility (PS) -21832 + (NN) -11800 + (LL) 3300
1D Compatibility (HY) -1600 + (ID) 2350
Total energy: -85723.0 ( -49.90 by residue)
QMean score : 0.490
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