Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHLDRQSLEKAKHLIQSGLIDTIEVGAIKGLQEIHRFLFEGLYEFAGKIRDKNIS--NFRFANCLYLDLILPRMESMPQNNFNQIIEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIALWDRIDKAAYLSAIKRSPVNDLEIKTLLKKHLSSNINDSLTFIKGITQSYYYEGL
3SE5 Chain:D ((11-163))
--IDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIREDNISKGGFRFANAMYLKEALVKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTD---------------------
General information:
TITO was launched using:
RESULT:
Template:
3SE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78543 for 1099 contacts (-71.5/contact) +
2D Compatibility (PS) -16142 + (NN) -6844 + (LL) 1176
1D Compatibility (HY) -18800 + (ID) 4700
Total energy: -123853.0 ( -112.70 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3SE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SE5-query.scw
PDB file :
Tito_Scwrl_3SE5.pdb
: