Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEDYAISLEEV---N---FNDFIVVDVRELDEYEELHLPNATLISVN-DQEKLADFLSQHKDQKVLLHCRAG--RRALDAAKSMHELGYTPYYLEGNVYDFEKYGFRMVYDDTSLSDKKN
3NHV Chain:A ((16-124))
----YETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTTKR--LSKEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKENGEVEGTLGAKADLFW
General information:
TITO was launched using:
RESULT:
Template:
3NHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43493 for 745 contacts (-58.4/contact) +
2D Compatibility (PS) -11318 + (NN) -5563 + (LL) 560
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -64264.0 ( -86.26 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3NHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NHV-query.scw
PDB file :
Tito_Scwrl_3NHV.pdb
: