Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGE---READFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3AFP Chain:A ((3-119))
GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTP-------EWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFE-REGEKRTVVEVEVDEIGPSLRYATAKVNK-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48455 for 656 contacts (-73.9/contact) +
2D Compatibility (PS) -11504 + (NN) -4426 + (LL) -940
1D Compatibility (HY) -3600 + (ID) 1900
Total energy: -70825.0 ( -107.96 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3AFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFP-query.scw
PDB file :
Tito_Scwrl_3AFP.pdb
: