Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFYRTGHQIIFETMLDL-NDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANLEYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFKNIKDVLVKTYDDIEILHNRKGD---ITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKLTIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVIDYLQLIAGSGRGGENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYREDYYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA |
4NMN Chain:B ((2-432)) | ----------PCDESAERAVLGSMLEDPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSE-GNKLDFVLIKDHLE-KK------PIDWLEELYEEAVSPDTLEEVCKIVKQRSAQRAIIQLGIELIHKGKENKD-FHTLIEEAQSRIFSIAESATSTQFYHVKDV---AEEVIELIYKFKSSDRLVTGLPSGFTELDLKTTGFHPGDLIILAARPGMGKTAFMLSIIYNLAKDEGKPSAVFSLEMSKEQLVMRLLSMMSEVPLFKIRSGSISNEDLKKLEASAIELAKYDIYLDDTPALTTTDLRIRARKLRKEKEVEFVAVDYLQLLRPPVRKS-PRQEEVAEVSRNLKALAKELRIPVMALAQLS--------KRPQLADLRESGQIEQDADLILFLHRPEYYT--PEEQGIAEVIIAKQRQGPTDIVKLAFIKEYTKFANL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174980 for 3028 contacts (-57.8/contact) +
2D Compatibility (PS) -45415 + (NN) -24393 + (LL) 2736
1D Compatibility (HY) -34800 + (ID) 8300
Total energy: -285152.0 ( -94.17 by residue)
QMean score : 0.426
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