Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKPRIYTMSFASVYPLYIQKAEKKD-------------------RTKEEVDEIIFWLTGYDQDSLQQAIDQAI--DFETFFAEAPKMNPNASLITGVICGYRVEEIEDKL-MQQIRYLDKLVDELAKGKKMEKILRK-----------
3VEA Chain:A ((1-149))
MKYQQLENLESGWKWAYLVKKHREGEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKRHFNAEHQHTRKKSIDLEFLVWQRLAVLARRRGNTLSDTVVQLIEDAERKEKYASQMSSLKQDLKDILDK
General information:
TITO was launched using:
RESULT:
Template:
3VEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19322 for 602 contacts (-32.1/contact) +
2D Compatibility (PS) -12547 + (NN) -4462 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -39781.0 ( -66.08 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_3VEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VEA-query.scw
PDB file :
Tito_Scwrl_3VEA.pdb
: