Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKNGNFLKKVGLAFLSILIVASTIFQTTVVKAATSYGSQFLNTVELLDKDGVPQTDFGYYDNMDVHYTWSIPNSTNVKAGDTMDFTLPSQLALATDLAFDVKDSKGQVVGTATVKKATNQVTLVFSDYVEKHSDVKGELDFWTAFNQKVITGNETVDLVFPLENGTTVIDVEVGEKTPVSPTETLFKYGWVDASNPSLIHWVVRVNYAKV-NIPNAVFTDIIGAKQTLNFDSIKAFHGTYSADRVFTAGAPISSTNFSATSDGFSVALGN----------LTDSVQISYTTTTTD-GGKSTQYDNTAKLAGTDFVTKQTSTWTPASGGGGEGGGTTGSVTLTKEDAKT-KATL---EGAEFKLVDSK-GTVLQENITTNASGQLSIADLKFD-TYQLIETKAPTGYKLDTTPVE----FTIGENNQAIT--V-TKENTLNTGSVELTKLDAATKATLAGATFELQDKEGNT----LQTDLKTDENGVLKVTDLVPGSYQFVETSAPTGYKLDNSPVSFEVIAGETDQVVKVTKENTLEVGSVELTKLDSATKA------TLAGATFELQDKEGNTLQTDLKTDENGVLKVTDLVPGSYQFVETSAPTGYKLDNSPVSFEVVAGETDQVVKVTKENTLEVGSVELTKLDSATKATLAGATFELQDKEGNTLQTGLTTDENGVLKVTDLVPGTYQFVETKAPIGYELDTTPVSFEIVAGETDPIVKVTKENTLVPPTPVPPTPVPPTPVPPTPVPPTPLPPVPYEPTVPPTKPEVPVTPKKTENSEDSPKTTPIRITQSLPKTGDTNSFAGLGVILIALSLSGLLLKRK |
2Y1V Chain:A ((187-571)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVGDVVEYEIVTKIPALANYATANWSDRMTEGLAFNKGTVKVTVDDVALEA--------GDYALTEVATGFDLKLTDAGLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYGNNPDHGNT-------PKPNKPNENGDLTLTKTWVDATGAPIPAGAEATFDLVNAQTGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVER-SIKGYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVND-KDNRLAGAEFVIANADNAGQYLARKADKVSQEEKQLVVTTKDA------LDRAVAA---------YNAL-------------TAQQQTQQEKEKVDKA-QAAYNAAVIAANNAFEWVADKDNENVVKLVSDAQGRFEITGLLAGTYYLEETKQPAGYALLTSRQKFEVTATS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 64026 for 2505 contacts (25.6/contact) +
2D Compatibility (PS) -36776 + (NN) -2288 + (LL) 23112
1D Compatibility (HY) -12800 + (ID) 3750
Total energy: 31524.0 ( 12.58 by residue)
QMean score : 0.278
|
|
|