Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MQVTDVRLRRVETDGRMRAIASITLD----EEFVVHDIRVIDGNNGLFVAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYER-----VGEEEATAVTEEESESVSAE
3NSW Chain:A ((1-106))
GSHMEYCPKMLSEIRQEDIND---VETVAYVTVTGKTARSYNLQYWRLYDVPKT----APSQWPSFGTLRDDCGNIQLTAD---TDYVLGCKSGNQDCFVKLHDG--LSQKEKDLLKE-
General information:
TITO was launched using:
RESULT:
Template:
3NSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22288 for 554 contacts (-40.2/contact) +
2D Compatibility (PS) -9091 + (NN) 1401 + (LL) 1208
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -34720.0 ( -62.67 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_3NSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NSW-query.scw
PDB file :
Tito_Scwrl_3NSW.pdb
: