Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIMLVFITLILVSLPIAQQTEAKDASAFNKENSISSMAPPASPPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVEKKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPGMTNQDNKIVVKNATKSNVNNAVNTLVE--RWNEKYAQAYPNVSAKIDYDDEMAYSESQLIAKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTKEQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVELTNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFLKDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEVNYD-PEGNEIVQHKNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRNISIWGTTLYPKYSNKVDNPIE- |
4D6W Chain:A ((1-415)) | --YLSIAFPENTKLDWKPVTKNTRYCPPGLQEESFLSSTPIGATPSKSD---------------------------GFLCHAAKWVTTCDFRWYGPKYITHSIHNIKPTRSDCDTALASYKS-----GTLVSLGF-PPESCGYASVTDSEFLVIMITPHHVGVDDYR-----------GHWVDPLFVGGECDQSYCDTIHNSSVWIPADQTKK-----------NICGQSFTPLTVTVAYDKTKEIAAGGIVFKSKYHSHMEGARTCRLSYCG---------RNGIKFPN----------GEWVSLDVKTRIQEKHLLPLFKECPAGTEVRS-------------------TLQSDGAQVLTSEIQRILDYSLCQNTWDKVERKEP-------LSPLDLSYLASKSP---GKGLAYTVI-------NGTLSFAHTRYVRMWIDGPVLKEPKGKRESPSGISSDI--WTQWFKYGDMEIGPNGLLKTAGGYKFPWHLIGMGIVDNELHELSE------------ANPLDHPQLP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4D6W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 73415 for 2965 contacts (24.8/contact) +
2D Compatibility (PS) -41515 + (NN) 483 + (LL) 8896
1D Compatibility (HY) -5600 + (ID) 3500
Total energy: 32179.0 ( 10.85 by residue)
QMean score : 0.115
|
|
|