Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
2JE8 Chain:A ((82-135))
----------------------------------------------------------------------------DGIQLIFEGLDTY--ADVYLNGSLLLKADNMF-VGYTLPVKS-VLRKGENHLYI-YFHS------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JE8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19827 for 293 contacts (-67.7/contact) +
2D Compatibility (PS) -5766 + (NN) 727 + (LL) 7044
1D Compatibility (HY) -5600 + (ID) 450
Total energy: -23872.0 ( -81.47 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_2JE8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JE8-query.scw
PDB file :
Tito_Scwrl_2JE8.pdb
: