Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKLDFSYNNANYNAEFLMKILTTLKDITKVEQF--TIEIIDAVPNDQEQFKEEKGLFSKEVFDFNNLVKESHGIKIDFKEITNILKQCRTVWELSMLVVTSENELNDSGKVLCEVELIEGDLFAIL-YSEDFNIDLFLEKFSTDEITIEG
1UG7 Chain:A ((1-128))
--GSSGSSGMSEVTRSLLQRWGASLRRGADFDSWGQLVEAIDEYQILARHLQKEAQAQHNN-SEFT-------------EEQKKTIGKIATCLELRSAALQSTQ--SQEEFKLEDLKKLEPILKNILTYNKEFPFDVQPISGPSSG-----
General information:
TITO was launched using:
RESULT:
Template:
1UG7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25754 for 913 contacts (-28.2/contact) +
2D Compatibility (PS) -13024 + (NN) -1645 + (LL) 1968
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -41905.0 ( -45.90 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1UG7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UG7-query.scw
PDB file :
Tito_Scwrl_1UG7.pdb
: