Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MEVFAEYLAEIENPDHRARTQEVLTWVAETFPDLKPEIKWNTPMFTNNGTFIIGFSIAKQHMSVSPEVAGIERFEADIKEAGYSHTKGIFRITWAKSVDYDLLAKIIKFNIQDKANYTSFWRV
2FOK Chain:A ((287-386))
VPKRVYWEMLATNLTDKEYVRTRRAL--ILEILIKAGS----------------LKIEQIQDNLKKLGFDEVIETIENDIKGLINT---GIF--IEIKGRFYQLKDHILQFVIPNRLV-------
General information:
TITO was launched using:
RESULT:
Template:
2FOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24833 for 621 contacts (-40.0/contact) +
2D Compatibility (PS) -10062 + (NN) -2279 + (LL) 2176
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -40148.0 ( -64.65 by residue)
QMean score : 0.376
(partial model without unconserved sides chains):
PDB file :
Tito_2FOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FOK-query.scw
PDB file :
Tito_Scwrl_2FOK.pdb
: