Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNDMYNNIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTYTPYRYISFEVVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ-
1PFS Chain:A ((1-78))
--------------------------MNIQITFTDSVRQGTSAKGNPYTFQEGFLHLEDKPHPLQCQFFVESVIPAGSYQVPYRINVN------------NGRPELAFDFKAMKRA
General information:
TITO was launched using:
RESULT:
Template:
1PFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9859 for 427 contacts (-23.1/contact) +
2D Compatibility (PS) -7902 + (NN) 2929 + (LL) 3004
1D Compatibility (HY) -400 + (ID) 650
Total energy: -12878.0 ( -30.16 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1PFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PFS-query.scw
PDB file :
Tito_Scwrl_1PFS.pdb
: