Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MNKDNRKELIRAYKEKSPDAGVYRFISTKSGKSLID-----------------NTMDLKGIANKLAFGVKIGAG---NMLPPEMAKEAKEHGIDTIQFEILEKVDIKPEMTKEDIKEENDVLLSLWLEREDI-----
2GM2 Chain:A ((1-132))
MPLNQEHPDYTYALRAA-----DGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAVLALNPAVILLGTGERQQFPSTDVLAACLTRGI---GLEAMT-NAAAARTYNVLASEGRRVALAMIVGGLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2GM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20562 for 696 contacts (-29.5/contact) +
2D Compatibility (PS) -10692 + (NN) 2703 + (LL) 308
1D Compatibility (HY) -400 + (ID) 650
Total energy: -29293.0 ( -42.09 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_2GM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM2-query.scw
PDB file :
Tito_Scwrl_2GM2.pdb
: