Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDYFDEEINIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFV-----VNKQKKWLEAVSEVLESRGESEKLG
1PFJ Chain:A ((1-108))
MATSSEEVLLIVKKVR--QKKQDGALYLMAERIAWAPEGKDRFTISHMYAD---IKCQKISPEGKAKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKAN--
General information:
TITO was launched using:
RESULT:
Template:
1PFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27650 for 696 contacts (-39.7/contact) +
2D Compatibility (PS) -10723 + (NN) 866 + (LL) 152
1D Compatibility (HY) -400 + (ID) 900
Total energy: -38655.0 ( -55.54 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1PFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PFJ-query.scw
PDB file :
Tito_Scwrl_1PFJ.pdb
: