Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKNILLICGSGASSGFMAAAIRKAAKKRGEQVTVKAASESQIDERI-NEIDYLLIGPHLAYMLDD-LKQKVADKDVLVSIIP-QATYGTLNGEKALDLILNMEG
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYD-IMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65452 for 761 contacts (-86.0/contact) +
2D Compatibility (PS) -11048 + (NN) -6266 + (LL) 100
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -87516.0 ( -115.00 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: