Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGLHI-TGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLGKFPLPLEVIPFGWKQVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLF-LHYVDIIICAKANGEIELIKK
3KWM Chain:D ((13-221))
----KKLAATEAAKSITTEITLGVGTGSTVGFLIE---ELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYREQT-----ITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNI-----
General information:
TITO was launched using:
RESULT:
Template:
3KWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82257 for 1811 contacts (-45.4/contact) +
2D Compatibility (PS) -22611 + (NN) -7892 + (LL) 1320
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -132540.0 ( -73.19 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_3KWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KWM-query.scw
PDB file :
Tito_Scwrl_3KWM.pdb
: