Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINQVYRLVS---ERQFEEANIEEA-LTEDVVVVRPTYLSICAADQRYYTGSRGKEMLSKKLPMALIHEGVGQVTYDATG--EFEIGTKVVMIPN----TPTEDDPVIAENYRRSSLF-------RSSGYDGLMQENVFMRRDRVVRLPENMDMEVAA-YSELISVAFHAITRFKQKANANQSVFGVWGDGNLGFITCLLLKTIYPESKVIIFGKTQYKLDFF-S--FVDEAHLVDE---I-PEGLVIDNAFECAGGKGSQYAVEQIIDLIKPEGTISLLGVSENPIEFNSRMVLEKGLTVFGSSRSGKEDFQNTVNFLSENERAVEYLSSLIGQRKVVRNLQDIIEAFETDLRNP-FGKTVMEWKV |
| 1YQD Chain:A ((14-358)) | -PVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF----SMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGL--DEPGKHIGIVGLGGLGHVAVKFAKA-FG-SKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA---VHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAA-KH----NITADI-EVIS---TDYLNTAMERLAKNDVRYRFVIDVG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YQD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163929 for 2736 contacts (-59.9/contact) +
2D Compatibility (PS) -33989 + (NN) -6182 + (LL) 1924
1D Compatibility (HY) -8400 + (ID) 2950
Total energy: -213526.0 ( -78.04 by residue)
QMean score : 0.423
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