Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELTKENFQKLDLIHLSLENRHSMSEIIDILSESYIEITQSGVV-KDYAYYKSLTTLG----D--SNLAIMEYDVKILDETKVLSYYKLKN---LS-E-----NNYTMRSNIWIFENGSWKLTFHQGTRII
3GZR Chain:A ((3-130))
--EGTDAIQALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGMHWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSALAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREGVWRFIHGHNTIV-
General information:
TITO was launched using:
RESULT:
Template:
3GZR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26848 for 762 contacts (-35.2/contact) +
2D Compatibility (PS) -11735 + (NN) 82 + (LL) 516
1D Compatibility (HY) -400 + (ID) 550
Total energy: -38935.0 ( -51.10 by residue)
QMean score : 0.366
(partial model without unconserved sides chains):
PDB file :
Tito_3GZR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZR-query.scw
PDB file :
Tito_Scwrl_3GZR.pdb
: