Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIK--LIKELIKDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLEVKVIPGITASIGAAAVLGAPIMH-----DFCHISLSDLMT--PWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEH-KSGDTVVGIVKDVGRKEERKIITTMQGIDYE----LVDMTTVVIVGNKETYVKNGKMITPRGYSL
1CBF Chain:A ((22-250))
KLYIIGAGPGDPDLITVKGLKLLQQADVVLYADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMREGKMVVRVHTGDPAMYGAIMEQMVLLKRE--GVDIEIVPGVTSVFAAAAAAEAELTIPDLTQTVILTRAEGRTPVPEFEKLTDL----AKHKCTIALFLSST-----LTKKVMKEFINAGWSEDTPVVVVYKATWPDEKIVRTTVKDLDDAMRTNGIRKQAMILAGWALD---------------
General information:
TITO was launched using:
RESULT:
Template:
1CBF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131136 for 1716 contacts (-76.4/contact) +
2D Compatibility (PS) -24254 + (NN) -10705 + (LL) 904
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -175541.0 ( -102.30 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1CBF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBF-query.scw
PDB file :
Tito_Scwrl_1CBF.pdb
: