Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVAGHPELASKSAEELVTNLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSD------GKTPVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEANKRFDAAK
1Y67 Chain:B ((3-212))
-AYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEG-TEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQ---NQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
1Y67.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72727 for 1600 contacts (-45.5/contact) +
2D Compatibility (PS) -20585 + (NN) -6104 + (LL) -172
1D Compatibility (HY) -21200 + (ID) 6100
Total energy: -126888.0 ( -79.31 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_1Y67.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y67-query.scw
PDB file :
Tito_Scwrl_1Y67.pdb
: