Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRKIIVGSRRSKLALTQSNWVINKLKENYPEFDFEIKEIVTKGDRILDVTLSKVGGKGLFVSEVEQALSDEAIDFAVHSMKDVPSSLKEGLIIGAIPKRESPLDCFVFNQVNSLDELPQGSVIGTSSLRRAAQLLKHRPDFVIKPIRGNIDTRLQKLHAENFDAIILAKAGLARMGWLENTTLKLEDIPPEVCLPAVGQGALAIECRESDQQIRDMLTSIHHEETGICVEAERVFLKKLNGGCEIPIAGFATRANEFVQFKGLVGNADGSIILESEQVGANPSEIGNKVAEDLLSEGAD----TIIKELRNV |
1F6Y Chain:A ((1-262)) | ---MLIIGER---INGMFGDIKRAIQERDPAPVQEWARRQEEGGARALDLN---VGDKVSAMEWLVEVTQEVS------NLTLCLDSTNIKAIEAGLKKCKNR---AMINSTN----------AEREKVEKLFPLAVEHGAALIGLTMN--KTGIPKDSDTRLAFAMELVAAADEFG------LPMEDLYIDPLILPANVA------QDHAPEVLKTLQQIKMLAD-----------PAPKTVLGLSNVSQNCQNRPLINRTFLAMAMACG--LMSAIADACDEALIETAATAEILLNQTVYCDSFVKMFKTR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1F6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -21107 for 2225 contacts (-9.5/contact) +
2D Compatibility (PS) -26680 + (NN) -5212 + (LL) 4892
1D Compatibility (HY) -2400 + (ID) 1600
Total energy: -52107.0 ( -23.42 by residue)
QMean score : 0.311
|
|
|