Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILLIDNYDSFTFNLEQYLAEF-SEVVVKRNDAADLIKIAA-LADGIVLSPGPGKPSDA---GLLEEVVAKFAKEKPLLGICLGHQAIGEVFGGEVKRAAKIRHGKVSTMRQT---AGAIFANLPEEMPVMRYHSLIVDKNTLPDVLEVLAIATDDSEVMAMKVKDYPVYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI
1QDL Chain:B ((3-195))
LTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVD--EVHRPLIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV--------------
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128485 for 1644 contacts (-78.2/contact) +
2D Compatibility (PS) -19680 + (NN) -4074 + (LL) 452
1D Compatibility (HY) -18800 + (ID) 3950
Total energy: -174537.0 ( -106.17 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: