Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRILEMFYDDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNISEPEMDTYLDLLDNMM---EELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGLLEYYKHLHSRYDSWFASY-DKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
2JAQ Chain:A ((1-201))
------MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLK------NIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLEN-------KLSFDIVIYLRVSTKTAISRIKKRGRSEEL----LIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-DVKT--QIELIMNKLNSI---
General information:
TITO was launched using:
RESULT:
Template:
2JAQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95487 for 1413 contacts (-67.6/contact) +
2D Compatibility (PS) -19889 + (NN) -7424 + (LL) 1900
1D Compatibility (HY) -15600 + (ID) 2900
Total energy: -139400.0 ( -98.66 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_2JAQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAQ-query.scw
PDB file :
Tito_Scwrl_2JAQ.pdb
: