Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQWTVKEMAAYVGISADTLRYYEKNKIIVPNR--LENGYRVYNTEHLLELKFILVMKYARFSLSEIKLMMEWLRSEPSVACNTASKELLALKAAEIKQTIAHYTKIAALLEELPQIDEVQDYSTVQKDVNTFVEHIFTDIRKDGF
1R8E Chain:A ((3-113))
ESYYSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKAQDLEM--------EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMK---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47303 for 623 contacts (-75.9/contact) +
2D Compatibility (PS) -12259 + (NN) -9311 + (LL) 2072
1D Compatibility (HY) -6800 + (ID) 1000
Total energy: -74601.0 ( -119.74 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1R8E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8E-query.scw
PDB file :
Tito_Scwrl_1R8E.pdb
: